Pairwise sequence alignment Help Icon

  the disclaimer   and I agree with the conditions and limitations associated with the usage of the software
 
  • Pairwise sequence alignment parameters
    Minimum similarity to keep results (0-100%): Gap creation penalty (1-100):
    Minimum overlap to keep results (0-100%): Gap extension penalty (1-10):
    Minimum overlap for rating reward (0-100%): Word size (1-256):
    Maximum alignments to display (1-1000): Penalty for a nucleotide mismatch:
    Select sorting mode:
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    Reward for a nucleotide match:
    Select the reference(s) file(s) to be used for the alignment:
    NameLocationStatus#Match(s) found
    FunCBShttp://www.westerdijkinstitute.nl/Collections/LocalReachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Collections\Alignments\DB2290.55200
    UNITEhttp://www.westerdijkinstitute.nl/Collections/LocalReachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Collections\Alignments\DB8836.58400
    Yeasthttp://www.westerdijkinstitute.nl/Collections/LocalReachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Collections\Alignments\DB54.100
    FUNGIhttp://www.q-bank.eu/Fungi/http://www.q-bank.eu/Fungi/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Fungi\Alignments\DB180.85600
    Fusariumhttp://www.westerdijkinstitute.nl/Fusarium/http://www.westerdijkinstitute.nl/Fusarium/Reachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Fusarium\Alignments\DB34.64400
    Dermatohttp://www.westerdijkinstitute.nl/Dermatophytes/http://www.westerdijkinstitute.nl/Dermatophytes/Reachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Dermatophytes\Alignments\DB12.38800
    Indoor.txthttp://www.westerdijkinstitute.nl/Indoor/http://www.westerdijkinstitute.nl/Indoor/Reachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Indoor\Alignments\DB37.1400
    Morchhttp://www.westerdijkinstitute.nl/Morchella/http://www.westerdijkinstitute.nl/Morchella/Reachable E:\BioloMICSBasedCBS\www.cbs.knaw.nl\Morchella\Alignments\DB16.64800
    ITSSeqhttp://www.medinf.net/http://www.medinf.net/Reachable E:\BioloMICSBasedBio\ITS.mycologylab.org\Alignments\DB54.62800
    Bipolarishttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB4.3400
    CGattiihttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB5.88800
    CNeofhttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB4.3200
    PJhttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB0.66800
    Scedohttp://mlst.mycologylab.org/http://mlst.mycologylab.org/Reachable E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB2.06400
    FunBOLDhttp://www.fungalbarcoding.org/http://www.fungalbarcoding.org/Reachable E:\BioloMICSBasedCBS\www.fungalbarcoding.org\Database\Alignments\DB484.20400
    PYCChttp://pycc.bio-aware.com/http://pycc.bio-aware.com/Reachable E:\BioloMICSBasedBio\PYCCNew.bio-aware.com\Alignments\DB33.32400
    MOLDseqhttp://fungibank.pasteur.fr/http://fungibank.pasteur.fr/Reachable E:\BioloMICSBasedBio\fungibank.pasteur.fr\Alignments\DB17.94400
    YEASTSeqhttp://fungibank.pasteur.fr/http://fungibank.pasteur.fr/Reachable E:\BioloMICSBasedBio\fungibank.pasteur.fr\Alignments\DB21.1600
    Non-redundant GenBankhttp://blast.ncbi.nlm.nih.gov/Blast.cgihttp://blast.ncbi.nlm.nih.gov/Blast.cgiReachable nr0027
 
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